Identification of Key Regulators in Glycogen Utilization in E. coli

Based on the Simulations from a Hybrid Functional Petri Net Model

(Additional file)

Zhongyuan Tian1, Adrien Fauré1, Hirotada Mori2 and Hiroshi Matsuno1

1Graduate School of Science and Engineering, Yamaguchi University, 1677-1 Yoshida, Yamaguchi-shi, Yamaguchi 753-8512, Japan

2Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0101, Japan

*Corresponding author: Hiroshi Matsuno- hmatsuno@yamaguchi-u.ac.jp

Additional file

Name

Description

AddFile 1

Model-1

Cell Illustrator 4.0# file of HFPN model of central metabolism pathway (glycolysis and PP pathway)

AddFile 2

Model-2

Cell Illustrator 4.0# file of HFPN model of PTS

AddFile 3

Model-3

Cell Illustrator 4.0# file of HFPN model of combination of glycolysis and PP pathway (Model-1) and PTS (Model-2)

AddFile 4

Model-4

Cell Illustrator 4.0# file of dynamic HFPN model of central metabolism pathway (Model-1), PTS (Model-2) and glycogen metabolism with the regulatory mechanisms.

AddFile 5

Figure S

Additional Figures.

AddFile 6

Methods

Detail Methods.

AddFile 7

Table S

Additional Tables.

 

# Cell Illustrator 4.0: A HFPN software in URL (http://www.cellillustrator.com/ci40)