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• A. Doi, M. Nagasaki, H. Matsuno, S. Miyano, ``Simulation based validation of
  the p53 transcriptional activity with hybrid functional Petri net,'' In Silico
  Biology, Vol.6, No.1, pp.1-13, 2006.

• H. Matsuno, S. T. Inouye, Y. Okitsu, Y. Fujii, and S. Miyano, A new regulatory
  interactions suggested by simulations for circadian genetic control
  mechanism in mammals, J. Bioinformatics and Computational Biology, 4(1),
  pp.139-157, 2006.

• 藤井靖,松野浩嗣,宮野悟,井上愼一,ハイブリッド関数ペトリネットによる哺
  乳類の時計遺伝子機構のモデル化とシミュレーション,時間生物学,
  Vol.11,No.1, pp.8-16, 2005.

• H. Matsuno, Y. Tanaka, H. Aoshima, A. Doi, M. Matsui, S. Miyano,
  Biopathways representation and simulation on hybrid functional Petri net, In
  Silico Biology, 3(3), pp.389 - 404, 2003.

• H. Matsuno, R. Murakami, R. Yamane, N. Yamasaki, S. Fujita, H. Yoshimori, S.
  Miyano, Boundary formation by Notch signaling in Drosophila multicellular
  systems: Experimental observations and a gene network modeling by
  Genomic Object Net, Proc. Pacific Symposium on Biocomputing 2003, pp.152
  -163, 2003.

• R. Okada, M. Sugii, H. Matsuno, S. Miyano, Machine learning prediction of
  amino acid patterns in protein N-myristoylation, Lecture Notes in
  Bioinformatics 4146 (2006 Workshop on Pattern Recognition In
  Bioinformatics (PRIB'06)), pp.4-14, Springer, 2006.


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