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Introduction

About Petri
Net Pathways

Biological pathway symbols

Overview of Petri net

Basic reactions of pathways

To hybrid Petri nets for simulations
Members
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Home > Introduction > About Petri Net Pathways

spacerAbout Petri Net Pathways

The Petri Net Pathway (PNP) is a website operated by Matsuno laboratory, Faculty of Science, Yamaguchi University, Japan. This website provides biological pathway models with discrete Petri nets as well as corresponding detailed explanation with flash animation. The aims of the modeling by Petri net are to make the biologists intuitively understand intrinsic structure and features of biological pathways, and to make it possible to mechanically model and simulate larger scale biological networks.

This website includes the following pathways. More information about pathways, proteins, and references can be obtained by clicking the corresponding buttons below.

| path : pathway | pro : proteins | ref : references |

Signaling pathways

G-protein path Button_pro Button_ref
IL-1 path Button_pro Button_ref
IL-1,6 path Button_pro Button_ref
IL-3 path Button_pro Button_ref
IL-6 path Button_pro Button_ref
PDGF path Button_pro Button_ref
IGF-1 path Button_pro Button_ref
TPO path Button_pro Button_ref
TGF-beta path Button_pro Button_ref
EGF path Button_pro Button_ref
Ca-signaling path Button_pro Button_ref
EGFR path Button_pro Button_ref
endocytosis path Button_pro Button_ref
GPCR path Button_pro Button_ref
GTPase path Button_pro Button_ref
MAPK path Button_pro Button_ref
PKA path Button_pro Button_ref
transcriptional reactions path Button_pro Button_ref
PiP-signal path Button_pro Button_ref
apoptosis path Button_pro Button_ref